Pan-vaccine antigen technique confers safety in opposition to cross-clade SARS-CoV-2 variants, together with vaccine-resistant Omicron variants

In a current article revealed in Science Translational Drugs, researchers developed a novel pan-vaccine antigen (Span)-based subunit vaccine in opposition to coronavirus illness 2019 (COVID-19). Utilizing a mouse mannequin, in addition they demonstrated that this vaccine formulation conferred safety in opposition to a number of clades of extreme acute respiratory syndrome coronavirus 2 (SARS-CoV-2).

Research: Vaccination with Span, an antigen guided by SARS-CoV-2 S protein evolution, protects in opposition to problem with viral variants in mice. Picture Credit score: Billion Photographs/Shutterstock


At the moment used messenger ribonucleic acid (mRNA) technology-based and another COVID-19 vaccines have confirmed immensely profitable in combating the illness. Nonetheless, because the evolutionary trajectory of SARS-CoV-2 has remained extremely diversified and unpredictable, there may be an pressing want for up to date vaccines that might struggle newer variants displaying fast antigenic drift of their spike (S) sequences.

It’s noteworthy that the SARS-CoV-2 S had over 7,000 amino acid (AA) mutations, together with insertions, substitutions, and deletions. As an illustration, mutations within the 484 place of E484 AA critically diminished the neutralization response in opposition to antibodies by over 10-fold, resulting in elevated immune evasion functionality.

Concerning the research

Within the current research, researchers analyzed 2,675 S protein sequences from 5 SARS-CoV-2 strains that emerged earlier than the Delta variant, obtained from the Nationwide Heart for Biotechnology Info (NCBI) database, to design Span, which harbored AA residues that had been constant throughout a number of SARS-CoV-2 strains.

Moreover, they systemically screened the infectivity of 54 pseudotyped SARS-CoV-2 strains to look at every one’s mutations. This train lined wild-type (WT) pressure, eight variants, and 45 single mutations and helped the researchers analyze the evolutionary path taken by the SARS-CoV-2 S protein.

The researchers vaccinated keratin 18 (K18)–hACE2 mice with subunit vaccines formulated utilizing Span antigen and an adjuvant. The check animals acquired 25 μg per dose of antigen at an interval of 14 days. The crew collected mouse serum samples 14 days post-second vaccination.

Research findings

Sera from Span-vaccinated mice exhibited a broader spectrum of neutralizing actions in opposition to all 10 variants evaluated within the research however markedly greater exercise in six of 10 variants. It had higher neutralization exercise in opposition to a number of immune-evading mutations (e.g., E484K, del69-70, N501Y).

Thus, Span additionally elicited an efficient neutralization response in opposition to the Omicron subvariants, with geometric imply titers ranging between 180 and 2333. Surprisingly, it might fight Delta, Beta, and Omicron VOCs as a result of the researchers designed it utilizing SARS-CoV-2 S sequences collated earlier than their emergence. These findings point out that Span may need potential immunogenicity in opposition to the longer term antigenic drift of SARS-CoV-2.

Relating to SARS-CoV-2 S protein evolution, the researchers famous that it advanced in three distinct evolutionary instructions. These evolutionary trajectories both elevated their infectivity and lowered immune resistance or vice -a versa. However, they resulted in heterogeneous antigenicity of S.

A common SARS-CoV-2 vaccine, thus, wants to contemplate all of the heterogeneous mutations throughout the identical antigen to be efficient in opposition to a number of SARS-CoV-2 variants. It additional implies that averaging or superimposing mutations doesn’t work. As a substitute, all phylogenetic calculations should additionally account for experimental proof of an antigen’s evolutionary trajectory to yield a common S sequence, together with probably the most frequent mutations.

Accordingly, the researchers famous that Span improved immune safety in opposition to uncovered mutations, comparable to E484Q. It additional favors the generalizability of the Span antigen. Relating to the impact of mutations on SARS-CoV-2 infectivity, the researchers discovered that the mutations nested within the N-terminal area (NTD) and receptor-binding area (RBD) of S had probably the most distinguished impact. Conversely, mutations nested outdoors these domains had minimal impact on viral infectivity.

Unassumingly, the S982A mutation nested within the heptad repeat 1 (HR1) area of the S2 subunit elevated viral infectivity. Maybe the extremely conserved nature of the HR1 area and its vital position within the SARS-CoV-2 membrane fusion course of makes it goal for SARS-CoV-2 therapeutic interventions. Furthermore, the S982A mutation decreased SARS-CoV-2’s sensitivity to neutralization by group IV monoclonal antibodies. Thus, the researchers recognized a novel mutation that, if re-surfaces regularly, have to be thought-about whereas designing COVID-19 therapies.


Total, high-frequency mutations within the Span vaccine helped it confer satisfactory safety in opposition to the extremely infectious Delta variant. It additionally elicited a broad humoral immune response in opposition to heterogeneous variants, comparable to Beta.

To conclude, the research information emphasize the necessity for additional improvement of Span as a vaccine antigen. Redesigning the Span and optimizing present vaccination methods might assist fight SARS-CoV-2 antigenic drift. Moreover, it might make means for common vaccines providing broad safety in opposition to current and future SARS-CoV-2 variants, together with vaccine-resistant Omicton-like variants.

Journal reference:

  • Vaccination with Span, an antigen guided by SARS-CoV-2 S protein evolution, protects in opposition to challenges with viral variants in mice, Yongliang Zhao, Wenjia Ni, Simeng Liang, Lianghui Dong, Min Xiang, Zeng Cai, Danping Niu, Qiuhan Zhang, Dehe Wang, Yucheng Zheng, Zhen Zhang, Dan Zhou, Wenhua Guo, Yongbing Pan, Xiaoli Wu, Yimin Yang, Zhaofei Jing, Yongzhong Jiang, Yu Chen, Huan Yan, Yu Zhou, Ke Xu, And Ke Lan, Science Translational Drugs (2023), doi: 10.1126/scitranslmed.abo3332

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